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Fast fluorometric enumeration of E. coli using passive chip

dc.authorid Tamer, Ugur/0000-0001-9989-6123
dc.authorid Suludere, Zekiye/0000-0002-1207-5814
dc.authorid Cetin, Demet/0000-0003-1186-4229
dc.authorid Yildirim, Ender/0000-0002-7969-2243
dc.authorscopusid 57188994126
dc.authorscopusid 56490357500
dc.authorscopusid 56789993500
dc.authorscopusid 36165070100
dc.authorscopusid 6603211547
dc.authorscopusid 57661109900
dc.authorscopusid 6603028058
dc.authorwosid Suludere, Zekiye/Gln-6018-2022
dc.authorwosid Cetin, Demet/Aag-5793-2019
dc.authorwosid Dogan, Uzeyir/Kfs-9584-2024
dc.authorwosid Boyaci, Ismail/A-5255-2013
dc.authorwosid Ertas, Nusret/Ahe-8075-2022
dc.authorwosid Yıldırım, Ender/K-3962-2019
dc.authorwosid Tamer, Ugur/Afs-5115-2022
dc.contributor.author Kasap, Esin Nagihan
dc.contributor.author Dogan, Uzeyir
dc.contributor.author Cogun, Ferah
dc.contributor.author Yildirim, Ender
dc.contributor.author Boyaci, Ismail Haklu
dc.contributor.author Cetin, Demet
dc.contributor.author Ertas, Nusret
dc.contributor.other Makine Mühendisliği
dc.date.accessioned 2020-02-07T13:00:02Z
dc.date.available 2020-02-07T13:00:02Z
dc.date.issued 2019
dc.department Çankaya University en_US
dc.department-temp [Kasap, Esin Nagihan; Dogan, Uzeyir; Tamer, Ugur; Ertas, Nusret] Gazi Univ, Fac Pharm, Dept Analyt Chem, TR-06330 Ankara, Turkey; [Cogun, Ferah; Yildirim, Ender] Cankaya Univ, Dept Mech Engn, TR-06790 Ankara, Turkey; [Boyaci, Ismail Haklu] Hacettepe Univ, Fac Engn, Dept Food Engn, TR-06800 Ankara, Turkey; [Cetin, Demet] Gazi Univ, Gazi Fac Educ, Dept Math & Sci Educ, TR-06500 Ankara, Turkey; [Suludere, Zekiye] Gazi Univ, Fac Sci, Dept Biol, TR-06500 Ankara, Turkey en_US
dc.description Tamer, Ugur/0000-0001-9989-6123; Suludere, Zekiye/0000-0002-1207-5814; Cetin, Demet/0000-0003-1186-4229; Yildirim, Ender/0000-0002-7969-2243 en_US
dc.description.abstract In this report, a passive microfluidic chip design was developed for fast and sensitive fluorometric determination of Escherichia coli (E. coli) based on sandwich immunoassay. Initially, magnetic nanoparticles (MNPs) and chitosan modified mercaptopropionic acid capped cadmium telluride (CdTe) quantum dots (QDs) were functionalized with E.coli specific antibody to form a sandwich immunoassay with the E. coli. The magnetic separation and preconcentration of the E.coli from the sample solution was performed in the vial. Conjugation of QDs to the magnetically captured E. coli and washing were performed using a passive type of microchip. The microfluidic chip consists of four microchambers connected to each other by microchannels which act as capillary valves. Signal measurement was performed at the last chamber by using a hand-held spectrofluorometer equipped with a fiber optic reflection probe. The selectivity of the method was tested with Enterobacter aerogenes (E. aerogenes) and Salmonella enteritidis (S. enteritidis), it was observed that these bacteria have no interference effect on E.coli determination. The calibration curve was found to be linear in the range of 10(1)-10(5) cfu/mL with a correlation coefficient higher than 0.99. The limit of detection was calculated as 5 cfu/mL. The method was successfully applied to spiked tap and lake water samples. The results suggest that the developed method is applicable for on-site E. coli detection and offers several advantages such as large dynamic range, high sensitivity, high selectivity and short analysis time. en_US
dc.description.publishedMonth 9
dc.description.sponsorship Scientific and Technological Research Council of Turkey (TUBITAK) [114Z408] en_US
dc.description.sponsorship This work was supported by the Scientific and Technological Research Council of Turkey (TUBITAK) with grant number 114Z408. en_US
dc.description.woscitationindex Science Citation Index Expanded
dc.identifier.citation Kasap, Esin Nagihan...et al., "Fast fluorometric enumeration of E. coli using passive chip", Journal of Microbiological Methods, Vol. 164, (2019). en_US
dc.identifier.doi 10.1016/j.mimet.2019.105680
dc.identifier.issn 0167-7012
dc.identifier.issn 1872-8359
dc.identifier.pmid 31381980
dc.identifier.scopus 2-s2.0-85070256735
dc.identifier.scopusquality Q3
dc.identifier.uri https://doi.org/10.1016/j.mimet.2019.105680
dc.identifier.volume 164 en_US
dc.identifier.wos WOS:000487171800014
dc.identifier.wosquality Q3
dc.institutionauthor Çoğun, Ferah
dc.institutionauthor Yıldırım, Ender
dc.language.iso en en_US
dc.publisher Elsevier en_US
dc.relation.publicationcategory Makale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı en_US
dc.rights info:eu-repo/semantics/closedAccess en_US
dc.scopus.citedbyCount 15
dc.subject E. Coil en_US
dc.subject Microfluidic Chip en_US
dc.subject Immunornagnetic Separation en_US
dc.subject Fluorescence en_US
dc.subject Sandwich Immunoassay en_US
dc.title Fast fluorometric enumeration of E. coli using passive chip tr_TR
dc.title Fast Fluorometric Enumeration of E. Coli Using Passive Chip en_US
dc.type Article en_US
dc.wos.citedbyCount 11
dspace.entity.type Publication
relation.isAuthorOfPublication 2f8f183a-f00f-49fd-ab01-3e2ecc1d8b68
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